Beam Shaping Optics of Flow Cytometer Systems and Methods Related Thereto

ABSTRACT

In some aspects, a flow cytometer system is provided that includes beam shaping optics positioned to manipulate a light beam and produce a resulting light beam that irradiates the core stream at the interrogation zone of the flow cell. The beam shaping optics include an acylindrical lens positioned to receive and focus light in a direction of a first axis orthogonal to a direction of light travel, and a cylindrical lens positioned to receive the light output from the acylindrical lens and to focus the light output from the acylindrical lens in a direction of a second axis orthogonal to the first axis and to the direction of light travel. The resulting light beam output has a flat-top shaped intensity profile along the first axis, and a Gaussian-shaped intensity profile along the second axis. Related methods of shaping a light beam at an interrogation zone of a flow cell are also provided.

CROSS-REFERENCE

This application claims the benefit of U.S. Provisional PatentApplication No. 61/785,922 filed Mar. 14, 2013, which application isincorporated herein by reference in its entirety.

SUMMARY

In some aspects of the present disclosure, a flow cytometer system isprovided. The flow cytometer system includes a flow cell for streaming ahydro-dynamically focused core stream past an interrogation zone, andbeam shaping optics positioned to receive and manipulate a first lightbeam, and to produce a resulting light beam that irradiates the corestream at the interrogation zone of the flow cell. The beam shapingoptics include an acylindrical lens positioned to receive and focuslight in a direction of a first axis orthogonal to a direction of lighttravel, and a cylindrical lens positioned to receive the light outputfrom the acylindrical lens and to focus the light output from theacylindrical lens in a direction of a second axis orthogonal to thefirst axis and to the direction of light travel. The resulting lightbeam output from the beam shaping optics has a flat-top shaped intensityprofile along the first axis, and a Gaussian-shaped intensity profilealong the second axis.

In some aspects of the present disclosure, a method of shaping a lightbeam at an interrogation zone of a flow cell is provided. The methodincludes streaming a hydro-dynamically focused core stream past aninterrogation zone in a flow cell; and receiving and manipulating afirst light beam with beam shaping optics to produce a resulting lightbeam that irradiates the core stream at the interrogation zone of theflow cell. The receiving and manipulating of the first light beam withthe beam shaping optics includes receiving and focusing light with anacylindrical lens in a direction of a first axis orthogonal to adirection of light travel; and receiving and focusing the light outputfrom the acylindrical lens with a cylindrical lens. The cylindrical lensfocuses the light output from the acylindrical lens in a direction of asecond axis orthogonal to the first axis and to the direction of lighttravel. The resulting light beam output from the beam shaping optics hasa flat-top shaped intensity profile along the first axis, and aGaussian-shaped intensity profile along the second axis.

BRIEF DESCRIPTION OF THE FIGURES

The accompanying drawings, which are incorporated herein, form part ofthe specification. Together with this written description, the drawingsfurther serve to explain the principles of, and to enable a personskilled in the relevant art(s), to make and use the systems and methodspresented. In the drawings, like reference numbers indicate identical orfunctionally similar elements.

FIG. 1 illustrates a flow cytometer system, according to one embodiment;

FIG. 2 illustrates a close up perspective view of an exemplary beamshaping optics and flow cell, according to one embodiment;

FIG. 3 illustrates an exemplary intensity profile for the collimatedlight in FIG. 2;

FIG. 4 illustrates an exemplary intensity profile generated for lightpassing through the acylindrical lens in FIG. 2;

FIG. 5 illustrates an exemplary intensity profile generated for lightpassing through both the acylindrical lens and cylindrical lens in FIG.2;

FIG. 6 illustrates a flat-top shaped intensity profile generated by thebeam shaping optics 101, according to one embodiment, according to oneembodiment;

FIG. 7 illustrates a top view of an exemplary flow cell in FIG. 2; and

FIG. 8 illustrates an intensity profile for the focused light beam atthe interrogation zone of the flow cell in FIG. 2, according to oneembodiment.

DETAILED DESCRIPTION

Before the embodiments of the present disclosure are described, it is tobe understood that the present disclosure is not limited to particularembodiments described, as such may, of course, vary. It is also to beunderstood that the terminology used herein is for the purpose ofdescribing particular embodiments only, and is not intended to belimiting, since the scope of the embodiments of the present disclosurewill be limited only by the appended claims.

The present disclosure relates generally to beam shaping optics thatprovide a uniform intensity distribution light beam. The beam shapingoptics may relate to flow cytometers, such as used in conjunction withhematology instruments or analysis. The beam shaping optics may also berelevant to a variety of technologies, such as, but not limited to,scanning microscopy, holography, optical bar code scanners, etc.

In some aspects of the present disclosure, beam shaping optics areprovided that provide a light beam with an intensity profile that isGaussian shaped along one axis that is orthogonal to the direction oflight travel, and flat-top shaped along another axis that is orthogonalto both the axis of the Gaussian shaped profile and to the direction oflight travel. The beam shaping optics include an acylindrical lenspositioned to receive and focus light in a direction of a first axisorthogonal to a direction of light travel, and a cylindrical lenspositioned to receive the light output from the acylindrical lens and tofocus the light output from the acylindrical lens in a direction of asecond axis orthogonal to the first axis and to the direction of lighttravel.

The acylindrical lens has a curved surface that has a curvature thatdoes not have a constant radius. The radius of the curvature of theacylindrical lens varies. For example, in one embodiment, the radius ofcurvature is non-constant with the shortest radius at the axis ofsymmetry, and the radius increasing away from the axis of symmetry. Inone embodiment, the radius of curvature follows a polynomial equationthat is an even order polynomial and a conic contribution, such as, butnot limited to, an even order twelfth-order polynomial or less. Forinstance, the polynomial equation may be represented by the followingequation:

R=ax ² +bx ⁴ +cx ⁶ +dx ⁸ +ex ¹⁰ +fx ¹²

wherein R is the radius of curvature, and a, b, c, d, e, and f areconstants of the polynomial equation. In one embodiment, theacylindrical lens is a plano-convex acylindrical lens, which has aplanar side on one side and a convex curvature on an opposite side.

The cylindrical lens has a curved surface that has a curvature that hasa constant radius which does not vary. In one embodiment, thecylindrical lens is a plano-convex cylindrical lens, which has a planarside on one side and a convex curvature on an opposite side. Thecylindrical lens is positioned with its axis of symmetry orthogonal tothe axis of symmetry of the acylindrical lens. In this way, thecylindrical lens receives the light beam from the acylindrical lens andfocuses it along an axis orthogonal to focusing axis of the acylindricallens and the direction of the light.

While the embodiments and descriptions may refer to “horizontal” and“vertical” axes or intensity profiles, it should be understood that theterms are used to provide relative axis orientations and to facilitateunderstanding. It should be understood that the underlying concepts andprinciples of the present disclosure are also applicable to otherembodiments, wherein the “vertical” beam profile is a flat-top profileand the “horizontal” beam profile is a Gaussian curve—e.g., with thecore stream flowing horizontally.

In some aspects of the present disclosure, a flow cytometer system isprovided. The flow cytometer system includes a flow cell for streaming ahydro-dynamically focused core stream past an interrogation zone, andbeam shaping optics positioned to receive and manipulate a first lightbeam, and to produce a resulting light beam that irradiates the corestream at the interrogation zone of the flow cell. The beam shapingoptics include an acylindrical lens positioned to receive and focuslight in a direction of a first axis orthogonal to a direction of lighttravel, and a cylindrical lens positioned to receive the light outputfrom the acylindrical lens and to focus the light output from theacylindrical lens in a direction of a second axis orthogonal to thefirst axis and to the direction of light travel. The resulting lightbeam output from the beam shaping optics has a flat-top shaped intensityprofile along the first axis, and a Gaussian-shaped intensity profilealong the second axis.

The flat-top shaped intensity profile includes a step-like shape thathas a generally flatter top portion which decreases to lower intensityvalues to each side of the flatter top portion. The flatter top portioncorresponds to a larger magnitude of intensity than the smaller sidevalues. The flatter top portion of the flat-top profile is flatter (ormaintains a more constant level of magnitude) than a corresponding topportion of a Gaussian shaped profile. The degree of flatness may bedefined by the coefficient of variation of the top portion of theintensity profile. The coefficient of variation (CV) may be representedas the standard deviation divided by the mean. The coefficient ofvariation may vary in different embodiments. In one embodiment, the topportion of the flat-top profile has a coefficient of variation of lessthan 5%. In another embodiment, the top portion of the flat-top profilehas a coefficient of variation of less than 3%. In yet anotherembodiment, the top portion of the flat-top profile has a coefficient ofvariation of less than 1%. Having a uniform intensity distributionprofiled light beam spot of small dimensions, as present with theflat-top intensity profile, provides many benefits for flow cytometry byensuring precise differential of various cellular components in anassay. For example, the mean and standard deviation is improved withoutwasting laser power. Moreover, greater scatter signals may be obtainedfor the same laser power as used in conventional methods. Furthermore,the flat-top intensity profile maintains precise polarization, which mayprove beneficial for measurements of depolarization of scatter lightfrom cells. Furthermore, the implementation of an acylindrical lens asdescribed herein enables better control of producing a flat-top profile.The acylindrical lens enables a wide flat top portion for the entireprofile. Moreover, the acylindrical lens enables the system to be morecompact in that the positioning between the two lenses (e.g.,acylindrical and cylindrical) may be smaller. For example, in oneembodiment, the distance between the two lenses may be within the rangeof 15 mm to 30 mm. In one embodiment, the distance between the twolenses may be within 20-25 mm, such as approximately 23 mm. Thedistances are exemplary and other distances may be implemented in otherembodiments. The spacing between the lenses may depend on variousfactors, such as on how far the focus point need to be, how small thespot size need to be, etc. Furthermore, in one embodiment, the usableflat-top range may be approximately 0.5 mm. It should be appreciatedthat this is exemplary and should not be construed as limiting, and thatother sizes of usable flat-top range may be implemented in otherembodiments.

In one embodiment, the flow cytometer system may include the lightsource that provides light to the beam shaping optics. For example, thelight source may include a laser coupled to an optical fiber to generatea laser beam directed to the beam shaping optics positioned between thelight source and flow cell. The beam shaping optics may include, forexample, a collimating lens to collimate the light before beingmanipulated by the acylindrical and cylindrical lens. In some instances,the collimating lens is an aspheric collimating lens.

The flow cell is positioned such that the light from the beam shapingoptics is directed to an interrogation zone in the flow cell. The flowcell includes a core stream which is flows past the interrogation zoneof the flow cell, and is irradiated by the resulting focused light as itpasses through the interrogation zone. The resulting light beam outputfrom the beam shaping optics has a flat-top shaped intensity profilealong a first axis which is orthogonal to the direction of light travel,and a Gaussian-shaped intensity profile along a second axis, which isorthogonal to both the first axis and to the direction of light travel.

The core stream 122 may include, for example, samples which arehydro-dynamically focused in a fluid sheath (e.g., injected into thecenter of the fluid sheath) and directed past the interrogation zone inthe flow cell. In one embodiment, the samples are hydro-dynamicallyfocused in the fluid sheath to produce a core stream having a samplestream that is generally only a single sample wide. The sheath fluid maybe, for example, water, saltwater, or other diluting agent, alone orwith any variety of chemicals for various purposes. It should beappreciated that coincident cells (e.g., more than one sample wide) mayoccur randomly from time to time. Example samples may include, but arenot limited to particles or cells, such as white blood cells, red bloodcells, platelets, beads, poly dispersed oil droplets, hematologycontrols, etc. The size of the samples varies depending on theparticular size of the samples, for instance.

When the core stream flows in the same direction in which thecylindrical lens focuses the light, the core stream flows in the samedirection as the Gaussian shaped intensity profile, and all samplesflowing through the interrogation zone of the flow cell encounter thesame amount of light along due to the Gaussian shaped profile. Forexample, the core stream may flow vertically and be exposed to avertical Gaussian shaped intensity profile as it passes verticallythrough the interrogation zone.

However, when the size of the samples is smaller than the size of thecore stream, the radial position of the samples within the core streammay vary. For example, if the core stream is flowing vertically, thecore stream has a horizontal width in which the samples may varyhorizontally. The flat-top profile may be used to provide a constantlevel of intensity for samples at different positions horizontally. Forinstance, the flattened top portion of the flat-top profile may be equalto or wider than the core stream to provide the same amount of lighthorizontally across the core stream. In one embodiment, the flattenedtop portion of the flat-top profile is wider than the core stream toprovide the same amount of light horizontally across the core stream. Insome instances, tolerances for movement of the core stream may also beaccounted for. In this way, when a detection system detects various data(e.g., axial light loss, scattered light, etc. from the flow cell), ahigher level of certainty is achieved that the data is accurate becausethere is less variation in the amount of light interrogating the sample.In certain situations, the horizontal flat-top beam profile alsoprovides the benefit of enabling the implementing of a wider core streamfor instance.

It should be appreciated that the size of the intensity profiles (e.g.,width of the flattened top portion of the flat-top profile), the size ofthe core stream, the size of the samples, the pressure and speed of thesheath fluid, the size of the interrogation zone, etc., may each vary indifferent embodiments depending the specific parameters desired.Furthermore, the distance and positioning of the beam shaping opticswith respect to each other and the flow cell may vary, in order toaccount for specific parameters chosen above. For example, theacylindrical lens and cylindrical lens should be positioned atcorresponding distances from each other and the flow cell to provide fora horizontal flat-top intensity profile that will have the flattened topportion equal to or greater than the horizontal width of the core streamin which the samples may vary.

Example Embodiments Shown in the Figures

FIG. 1 illustrates a top view of a flow cytometer system, according toone embodiment. Flow cytometer system 100 is shown including beamshaping optics 101, flow cell 120, light source 140, and detectionsystem 160. Light source 140 may include, for example, a laser coupledto an optical fiber to generate a laser beam directed to the beamshaping optics 101 positioned between the light source 140 and flow cell120. The laser beam is manipulated by the beam shaping optics 101 toprovide a focused beam directed to an interrogation zone 121 of the flowcell 120. A core stream within the flow cell 120 is irradiated by thefocused beam as it flows past the interrogation zone of the flow cell120. The core stream 122 and interrogation zone 121 are shown moreclearly in FIGS. 2 and 7. At the interrogation zone 121, the beamshaping optics 101 produce a focused beam having specifically shapedintensity profiles along axes which are orthogonal to the direction oftravel of the laser beam.

Beam shaping optics 101 is shown including a collimating lens 102,acylindrical lens 103, and cylindrical lens 104. The collimating lens102 is positioned to receive a light beam and produce collimated lightdirected to the acylindrical lens 103. The acylindrical lens 103 ispositioned to receive the collimated light and focus the light along asingle axis orthogonal to the direction of the light. For example, alight exiting the acylindrical lens may converge in the vertical plane.The cylindrical lens 104 is positioned with its axis of symmetryorthogonal to the axis of symmetry of the acylindrical lens. In thisway, the cylindrical lens 104 receives the light beam from theacylindrical lens 103 and focuses it along an axis orthogonal tofocusing axis of the acylindrical lens 103 and the direction of thelight.

Flow cell 120 is positioned such that the light from the beam shapingoptics 101 is directed to an interrogation zone in the flow cell 120.Flow cell 120 includes a core stream 122 which is directed past theinterrogation zone 121 of the flow cell 120. In this way, the corestream 122 flowing through the flow cell 120 is irradiated by thefocused light as it passes through the interrogation zone 121. The corestream 122 may include, for example, samples which are hydro-dynamicallyfocused in a fluid sheath (e.g., injected into the center of the fluidsheath) and directed past the interrogation zone 121 in the flow cell102. In one embodiment, the samples are hydro-dynamically focused in thefluid sheath to produce a core stream having a sample stream that isgenerally only a single sample wide.

The width of the core stream may vary in different embodiments. In oneembodiment, for example, the width of the core stream includes, but isnot limited to, a width within 10-30 microns, such as 15-25 microns. Thepressure and speed of the core stream may in different embodiments. Forexample, the pressure of the core stream may include, but is not limitedto, a pressure of 8-20 pounds per square inch, such as 10-15 pounds persquare inch. Moreover, the speed of the core stream may include, but isnot limited to, a speed of approximately 5-15 meters per second, such as8-12 meters per second.

Detection system 160 is positioned next to the flow cell to detect lightemitted from the flow cell. For example, detection system 160 mayinclude one or more detectors to detect axial light loss and/or one ormore detectors to measure the amount of scattered light resulting fromwhen the core stream is irradiated by the focused light beam at theinterrogation zone. For instance, the detection system 160 may includeone or more detectors to detect intermediate angle scatter (IAS) and/orforward scatter.

The detection system 160 may also include lenses and detectors fordetecting fluorescent light, polarized side scatter, and/or depolarizedside scatter. Furthermore, one or more detectors may be positioned invarious positions around the flow cell—e.g., at 90 degrees from the flowcell. The detection system 160 may also include other components such aslenses, reflectors or mirrors, etc., which are not shown. For example,detection system 160 may include components such as lenses, reflectorsor mirrors, etc. It

FIG. 2 illustrates a close up perspective view of an exemplary beamshaping optics and flow cell of the flow cytometer system 100 shown inFIG. 1, according to one embodiment. The x, y, and z axes areillustrated and shown for reference purposes.

Acylindrical lens 103 is positioned with its axis of symmetry in thevertical direction along the y-axis. The acylindrical lens shown isplano-convex with a planar side and convex side. The radius of curvatureof the convex side 133 varies and is not constant. Collimated light 210,such as produced by collimating lens 102 shown in FIG. 1, travels in thez-direction towards the planar side of the acylindrical lens 103. Insome embodiments, the output from the optical fiber coupled to the laseris first expanded. For example, in one embodiment, the output from theoptical fiber coupled to the laser may have approximately a 5 microncircular spot diameter at the fiber tip and may be expanded toapproximately 1000 micron circular spot diameter.

FIG. 3 illustrates an intensity profile 211 for the collimated light210. The collimated light 210, as shown, travels into the paper alongthe z-axis. In the x-y plane, the intensity profile 211 for thecollimated light 210 is Gaussian shaped horizontally along the x-axisand vertically along the y-axis.

Returning to FIG. 2, the planar side of acylindrical lens 103 receivesthe collimated light 210 and focuses the light along the x-axis as itexits the convex side of acylindrical lens 103. For example, the longfocal length of the acylindrical lens positioned at a distance convergesthe light in the horizontal plane over a distance to the interrogationzone of the flow cell. The intensity profile gradually varies as thelight travels further away from the acylindrical lens 103. As shown inFIG. 4, the intensity profile 213 generated by the acylindrical lens 103becomes smaller in width and generally flat-top shaped horizontallyalong the x-axis. The intensity profile 213 remains Gaussian shapedvertically along the y-axis.

The cylindrical lens 104 is positioned in the path of the focused lightexiting the acylindrical lens 103. The cylindrical lens 104 ispositioned with its axis of symmetry along the x-axis, which isperpendicular to the axis of symmetry of the acylindrical lens 103 alongthe y-axis. Both the x and y axes are orthogonal to the direction oftravel of the light. The cylindrical lens 104 shown is plano-convex withits convex side receiving the focused light from the acylindrical lens103. The radius of curvature of the convex side 144 of the cylindricallens 104 is constant.

The cylindrical lens 104 focuses the light along the y-axis as it exitsthe planar side of cylindrical lens 104. The shorter focal length of thecylindrical lens in the orthogonal orientation focuses the beam in inthe vertical plane. The intensity profile gradually varies as the lighttravels further away from the cylindrical lens 104. As shown in FIG. 5,the intensity profile 215 generated by the cylindrical lens 103 becomessmaller in width and remains Gaussian shaped vertically along they-axis. The intensity profile 215 remains flat-top shaped horizontallyalong the x-axis. The focusing of the light along the y-axis alsocontributes to further flattening of the top of the flat-top shapedprofile. The net result of the mutually independent focusing at the corestream has a flat-top profile horizontally and a Gaussian profilevertically over a small distance encompassing the core stream.

FIG. 6 illustrates a flat-top shaped intensity profile generated by thebeam shaping optics 101, according to one embodiment. The vertical axisof the graph represents the magnitude of intensity of the light (e.g.,W/cm²), while the horizontal axis of the graph represents the horizontaldistance (e.g., microns) along the x-axis.

Intensity profile 601 is a flat-top shaped horizontal intensity profilegenerated by the beam shaping optics 101 at the interrogation zone 121of the flow cell 120 in FIG. 2. Also shown for comparison purposes isthe ideal intensity profile 602.

The flat-top shaped intensity profile includes a step-like shape thathas a generally flatter top portion which decreases to lower intensityvalues to each side of the flatter top portion. The flatter top portioncorresponds to a larger magnitude of intensity than the smaller sidevalues. The flatter top portion of the flat-top profile is flatter (ormaintains a more constant level of magnitude) than, for example, acorresponding top portion of a Gaussian shaped profile. The degree offlatness may be defined by the coefficient of variation of the flattenedtop portion of the flat-top intensity profile. In one embodiment, thetop portion FT of profile 601 has a coefficient of variation of lessthan 5%. In another embodiment, the top portion has a coefficient ofvariation of less than 3%. In yet another embodiment, the top portionhas a coefficient of variation of less than 1%.

Profile 602 includes a generally flattened top portion. While the topportion is not completely flat, it is referred to as “generallyflattened” because the top portion is flattened with respect to thecurvature of a corresponding portion of a Gaussian shaped profile.

When the cylindrical lens 104 is implemented and focuses the lightvertically along the y-axis, the top portion of the profile is flattenedout further, as represented by profile 601. Furthermore, the steepnessof the slopes on the sides is increased. In the embodiment shown in FIG.6, the top portion FT of profile 601 has a coefficient of variation ofless than 1% over approximately 40 micron by 40 micron region (e.g., 40microns across x-axis over 40 microns across z-axis). For example, the40 micron wide flattened top portion FT is able to provide anapproximately constant intensity of light across a core stream that is40 microns wide or smaller—e.g., 10-25 microns wide.

The width of the flattened top portion FT of a flat-top intensityprofile may vary in different embodiments. In one embodiment, forexample, the width of the flattened top portion FT of a flat-topintensity profile includes, but is not limited to, a width within 30-80microns wide, such as 40-65 microns.

Returning to FIG. 2, the flow cell 120 is positioned in the path of thefocused light exiting the cylindrical lens 104. The flow cell ispositioned so that the focused light is directed to an interrogationzone 121 and irradiates the core stream 122 passing vertically along they-axis through the interrogation zone 121.

The distance the flow cell is from the beam shaping optics may vary indifferent embodiments, but should generate an intensity profile at theinterrogation zone that is Gaussian shaped vertically along the y-axisand flat-top shaped horizontally along the x-axis. For example, in oneembodiment, the flat-top shape in the horizontal position resembles theintensity profile 601 shown in FIG. 6. The width of the top portion ofthe flat-top shaped intensity profile may vary in different embodiments.Having the horizontal width of the top portion of the flat-top shapedintensity profile equal to or larger than the horizontal width of thecore stream 122 in the interrogation zone 121 ensures that each samplein the core stream 122 is exposed to the approximately the same amountof light irrespective of the sample's horizontal position within thecore stream. The difference in the amount of light will be limited bythe coefficient of variation (e.g., 1% or less) of the flat-top profileimplemented. For example, FIG. 7 illustrates a top view of the flow cell120 in FIG. 2. Flow cell 120 includes a core stream 122 flowing in they-axis (e.g., out of the paper). The focused light from the beam shapingoptics 101 is traveling in the z-direction towards the flow cell 120. Atthe interrogation zone 121 (shown more clearly in FIG. 2) of the flowcell 120, the focused light has a horizontal intensity profile along thex-axis that is shaped as a flat-top. In one embodiment, the width of theflattened top portion of the horizontal intensity profile is larger thanthe width of the core stream, as represented in FIG. 7 by the dottedlines. In this way, despite a sample's horizontal position in the corestream, the same amount of light is encountered. For example, in oneembodiment, the core stream is between 15-25 microns wide along thex-axis and the flattened top portion of the horizontal intensity profileis between 35 and 70 microns wide. It should be appreciated that thesesizes are exemplary and that other sizes may be implemented in otherembodiments.

While the vertical intensity profile along the y-axis is Gaussianshaped, each sample travels the entire vertical distance of theinterrogation zone and is exposed to the same amount of light from theGaussian shaped vertical intensity profile.

FIG. 8 illustrates the intensity profile for the focused light beam atthe interrogation zone of the flow cell, according to one embodiment.The intensity profile 800 is shown having a Gaussian shape in thevertical direction along the y-axis, and flat-top shaped in thehorizontal direction along the x-axis. The flattened top portion FT ofthe horizontally flat-top shaped profile ensures that samples areexposed to the same amount of light irrespective of their horizontalposition along the x-axis.

Additional Example Embodiments

In some aspects of the present disclosure, a flow cytometer system isprovided. The flow cytometer system includes a flow cell for streaming ahydro-dynamically focused core stream past an interrogation zone, andbeam shaping optics positioned to receive and manipulate a first lightbeam, and to produce a resulting light beam that irradiates the corestream at the interrogation zone of the flow cell. The beam shapingoptics include an acylindrical lens positioned to receive and focuslight in a direction of a first axis orthogonal to a direction of lighttravel, and a cylindrical lens positioned to receive the light outputfrom the acylindrical lens and to focus the light output from theacylindrical lens in a direction of a second axis orthogonal to thefirst axis and to the direction of light travel. The resulting lightbeam output from the beam shaping optics has a flat-top shaped intensityprofile along the first axis, and a Gaussian-shaped intensity profilealong the second axis.

In one embodiment, the core stream flows in a direction of the secondaxis, and wherein a flattened top portion of the flat-top shapedintensity profile along the first axis is equal to or wider than a widthof the core stream along the second axis.

In one embodiment, the flattened top portion of the flat-top shapedintensity profile has a coefficient of variation of less than 5%. Insome instances, the flattened top portion of the flat-top shapedintensity profile has a coefficient of variation of less than 3%. Insome instances, the flattened top portion of the flat-top shapedintensity profile has a coefficient of variation of less than 1%.

In one embodiment, the acylindrical lens is plano-convex and positionedto receive light on a planar side of the acylindrical lens and to outputlight on a convex side of the acylindrical lens. The cylindrical lens isplano-convex and positioned to receive light on a convex side of thecylindrical lens and to output light on a planar side of the cylindricallens. The acylindrical lens has an axis of symmetry orthogonal to anaxis of symmetry of the cylindrical lens.

In one embodiment, the beam shaping optics includes a collimating lens,the acylindrical lens positioned between the collimating lens and thecylindrical lens.

In one embodiment, the flow cytometer system includes a light source toprovide the first light beam; the light source including a fiber coupledto a laser.

In one embodiment, the flow cytometer system includes a detection systemto detect light from the flow cell.

In one embodiment, the core stream includes a sample stream positionedwithin a sheath fluid, wherein the sample stream is generally a singlesample wide.

In some aspects of the present disclosure, a method of shaping a lightbeam at an interrogation zone of a flow cell is provided. The methodincludes streaming a hydro-dynamically focused core stream past aninterrogation zone in a flow cell; and receiving and manipulating afirst light beam with beam shaping optics to produce a resulting lightbeam that irradiates the core stream at the interrogation zone of theflow cell. The receiving and manipulating of the first light beam withthe beam shaping optics includes receiving and focusing light with anacylindrical lens in a direction of a first axis orthogonal to adirection of light travel; and receiving and focusing the light outputfrom the acylindrical lens with a cylindrical lens. The cylindrical lensfocuses the light output from the acylindrical lens in a direction of asecond axis orthogonal to the first axis and to the direction of lighttravel. The resulting light beam output from the beam shaping optics hasa flat-top shaped intensity profile along the first axis, and aGaussian-shaped intensity profile along the second axis.

In one embodiment, the core stream flows in a direction of the secondaxis, and wherein a flattened top portion of the flat-top shapedintensity profile along the first axis is equal to or wider than a widthof the core stream along the second axis.

In one embodiment, the flattened top portion of the flat-top shapedintensity profile has a coefficient of variation of less than 5%. Insome instances, the flattened top portion of the flat-top shapedintensity profile has a coefficient of variation of less than 3%. Insome instances, the flattened top portion of the flat-top shapedintensity profile has a coefficient of variation of less than 1%.

In one embodiment, the acylindrical lens is plano-convex and positionedto receive light on a planar side of the acylindrical lens and to outputlight on a convex side of the acylindrical lens. The cylindrical lens isplano-convex and positioned to receive light on a convex side of thecylindrical lens and to output light on a planar side of the cylindricallens. The acylindrical lens has an axis of symmetry orthogonal to anaxis of symmetry of the cylindrical lens.

In one embodiment, the beam shaping optics includes a collimating lens,the acylindrical lens positioned between the collimating lens and thecylindrical lens.

In one embodiment, the method includes providing the first light beamwith a light source, the light source including a fiber coupled to alaser.

In one embodiment, the method includes detecting light from the flowcell with a detection system. The method may also include processing thedetected light from the flow cell to provide various parameters,characteristics, etc., of one or more samples in the core stream. Forexample, data from the detectors may be used to provide various scatterplots, etc. for the samples to identify or differentiate the samples,count samples, etc. The data may be processed by one or more processorsof a computer system, for example, that is communicably coupled to thedetection system.

In one embodiment, the core stream includes a sample stream positionedwithin a sheath fluid, wherein the sample stream is generally a singlesample wide.

In one embodiment, the core stream includes a sample stream positionedwithin a sheath fluid, wherein the sample stream is generally a singlesample wide.

It should be appreciated that the previous description for the flowcytometer system may apply equally to the method of shaping a light beamat an interrogation zone of a flow cell. For the sake of clarity andbrevity, the common features will not be described in great detailagain.

Other embodiments and modifications within the scope of the presentdisclosure will be apparent to those skilled in the relevant art.Various modifications, processes, as well as numerous structures towhich the embodiments of the present disclosure may be applicable willbe readily apparent to those of skill in the art to which the presentdisclosure is directed upon review of the specification. Various aspectsand features of the present disclosure may have been explained ordescribed in relation to understandings, beliefs, theories, underlyingassumptions, and/or working or prophetic examples, although it will beunderstood that the present disclosure is not bound to any particularunderstanding, belief, theory, underlying assumption, and/or working orprophetic example.

It should be understood that some of the techniques introduced above,such as the detection and processing of the data from the flowcytometry, the control of the light source, etc., can be implemented byprogrammable circuitry programmed or configured by software and/orfirmware, or they can be implemented entirely by special-purpose“hardwired” circuitry, or in a combination of such forms. Suchspecial-purpose circuitry (if any) can be in the form of, for example,one or more application-specific integrated circuits (ASICS),programmable logic devices (PLDs), field-programmable gate arrays(FPGAs), etc.

Software or firmware implementing the techniques introduced herein maybe stored on a machine-readable storage medium and may be executed byone or more general-purpose or special-purpose programmablemicroprocessors. A “machine-readable medium”, as the term is usedherein, includes any mechanism that can store information in a formaccessible by a machine (a machine may be, for example, a computer,network device, cellular phone, personal digital assistant (PDA),manufacturing took, any device with one or more processors, etc.). Forexample, a machine-accessible medium includes recordable/non-recordablemedia (e.g., read-only memory (ROM); random access memory (RAM);magnetic disk storage media; optical storage media; flash memorydevices; etc.), etc.

The preceding examples are put forth so as to provide those of ordinaryskill in the art with a complete disclosure and description of how tomake and use the embodiments of the invention, and are not intended tolimit the scope of what the inventors regard as their invention nor arethey intended to represent that the experiments below are all or theonly experiments performed. Efforts have been made to ensure accuracywith respect to numbers used (e.g., amounts, temperature, etc.) but someexperimental errors and deviations should be accounted for. Unlessindicated otherwise, parts are parts by weight, molecular weight isweight average molecular weight, temperature is in degrees Centigrade,and pressure is at or near atmospheric.

Where a range of values is provided, it is understood that eachintervening value, to the tenth of the unit of the lower limit unlessthe context clearly dictates otherwise, between the upper and lowerlimits of that range is also specifically disclosed. Each smaller rangebetween any stated value or intervening value in a stated range and anyother stated or intervening value in that stated range is encompassedwithin the present disclosure. The upper and lower limits of thesesmaller ranges may independently be included or excluded in the range,and each range where either, neither or both limits are included in thesmaller ranges is also encompassed within the present disclosure,subject to any specifically excluded limit in the stated range. Wherethe stated range includes one or both of the limits, ranges excludingeither or both of those included limits are also included in the presentdisclosure.

In the description of the present disclosure herein, it will beunderstood that a word appearing in the singular encompasses its pluralcounterpart, and a word appearing in the plural encompasses its singularcounterpart, unless implicitly or explicitly understood or statedotherwise. Further, it will be understood that for any given componentdescribed herein, any of the possible candidates or alternatives listedfor that component, may generally be used individually or in combinationwith one another, unless implicitly or explicitly understood or statedotherwise. Additionally, it will be understood that any list of suchcandidates or alternatives, is merely illustrative, not limiting, unlessimplicitly or explicitly understood or stated otherwise.

Various terms are described below to facilitate an understanding of thepresent disclosure. It will be understood that a correspondingdescription of these various terms applies to corresponding linguisticor grammatical variations or forms of these various terms. It will alsobe understood that the present disclosure is not limited to theterminology used herein, or the descriptions thereof, for thedescription of particular embodiments. The publications discussed hereinare provided solely for their disclosure prior to the filing date of theapplication. Nothing herein is to be construed as an admission that theembodiments of the present disclosure are not entitled to antedate suchpublication by virtue of prior invention. Further, the dates ofpublication provided may be different from the actual publication dateswhich may need to be independently confirmed.

That which is claimed is:
 1. A flow cytometer system, comprising: a flowcell for streaming a hydro-dynamically focused core stream past aninterrogation zone; beam shaping optics positioned to receive andmanipulate a first light beam, and to produce a resulting light beamthat irradiates the core stream at the interrogation zone of the flowcell; wherein the beam shaping optics comprises: an acylindrical lenspositioned to receive and focus light in a direction of a first axisorthogonal to a direction of light travel; and a cylindrical lenspositioned to receive the light output from the acylindrical lens and tofocus the light output from the acylindrical lens in a direction of asecond axis orthogonal to the first axis and to the direction of lighttravel; wherein the resulting light beam output from the beam shapingoptics has a flat-top shaped intensity profile along the first axis, anda Gaussian-shaped intensity profile along the second axis.
 2. The flowcytometer system of claim 1, wherein the core stream flows in adirection of the second axis, and wherein a flattened top portion of theflat-top shaped intensity profile along the first axis is equal to orwider than a width of the core stream along the second axis.
 3. The flowcytometer system of claim 1, wherein the flattened top portion of theflat-top shaped intensity profile has a coefficient of variation of lessthan 5%.
 4. The flow cytometer system of claim 3, wherein the flattenedtop portion of the flat-top shaped intensity profile has a coefficientof variation of less than 3%.
 5. The flow cytometer system of claim 3,wherein the flattened top portion of the flat-top shaped intensityprofile has a coefficient of variation of less than 1%.
 6. The flowcytometer system of claim 1, wherein the acylindrical lens isplano-convex and positioned to receive light on a planar side of theacylindrical lens and to output light on a convex side of theacylindrical lens; wherein the cylindrical lens is plano-convex andpositioned to receive light on a convex side of the cylindrical lens andto output light on a planar side of the cylindrical lens; and whereinthe acylindrical lens has an axis of symmetry orthogonal to an axis ofsymmetry of the cylindrical lens.
 7. The flow cytometer system of claim1, wherein the beam shaping optics comprises a collimating lens, theacylindrical lens positioned between the collimating lens and thecylindrical lens.
 8. The flow cytometer system of claim 1, comprising alight source to provide the first light beam; the light source includinga fiber coupled to a laser.
 9. The flow cytometer system of claim 1,comprising a detection system to detect light from the flow cell. 10.The flow cytometer system of claim 1, wherein the core stream comprisesa sample stream positioned within a sheath fluid, wherein the samplestream is generally a single sample wide.
 11. A method of shaping alight beam at an interrogation zone of a flow cell, comprising:streaming a hydro-dynamically focused core stream past an interrogationzone in a flow cell; receiving and manipulating a first light beam withbeam shaping optics to produce a resulting light beam that irradiatesthe core stream at the interrogation zone of the flow cell; wherein thereceiving and manipulating of the first light beam with the beam shapingoptics comprises: receiving and focusing light with an acylindrical lensin a direction of a first axis orthogonal to a direction of lighttravel; and receiving and focusing the light output from theacylindrical lens with a cylindrical lens, wherein the cylindrical lensfocuses the light output from the acylindrical lens in a direction of asecond axis orthogonal to the first axis and to the direction of lighttravel; and wherein the resulting light beam output from the beamshaping optics has a flat-top shaped intensity profile along the firstaxis, and a Gaussian-shaped intensity profile along the second axis. 12.The method of claim 11, wherein the core stream flows in a direction ofthe second axis, and wherein a flattened top portion of the flat-topshaped intensity profile along the first axis is equal to or wider thana width of the core stream along the second axis.
 13. The method ofclaim 11, wherein the flattened top portion of the flat-top shapedintensity profile has a coefficient of variation of less than 5%. 14.The method of claim 13, wherein the flattened top portion of theflat-top shaped intensity profile has a coefficient of variation of lessthan 3%.
 15. The method of claim 13, wherein the flattened top portionof the flat-top shaped intensity profile has a coefficient of variationof less than 1%.
 16. The method of claim 11, wherein the acylindricallens is plano-convex and positioned to receive light on a planar side ofthe acylindrical lens and to output light on a convex side of theacylindrical lens; wherein the cylindrical lens is plano-convex andpositioned to receive light on a convex side of the cylindrical lens andto output light on a planar side of the cylindrical lens; and whereinthe acylindrical lens has an axis of symmetry orthogonal to an axis ofsymmetry of the cylindrical lens.
 17. The method of claim 11, whereinthe beam shaping optics comprises a collimating lens, the acylindricallens positioned between the collimating lens and the cylindrical lens.18. The method of claim 11, comprising providing the first light beamwith a light source, the light source including a fiber coupled to alaser.
 19. The method of claim 11, comprising detecting light from theflow cell with a detection system.
 20. The method of claim 11, whereinthe core stream comprises a sample stream positioned within a sheathfluid, wherein the sample stream is generally a single sample wide.